![]() 3.1.0, A modular open-source assemblerĪnaconda v2.3.0 python distribution (python 2.7.10) Python infoĪnaconda v4.4.0 python distribution (python 2.7.13) Python infoĪnaconda v4.4.0 python distribution (python 3.6.1) Python infoĪrpack v 96 - Arnoldi Method distributed parallel eigenvector softwareĪutomatic Differentiation Model Builder v 11.2bĪWS v 1.11.170, Amazon web services command-line interfaceīCFtools v 1.5-32, utility for manipulating bcf and vcf filesīedtools v 2.17.0 utility for genomic manipulationsīioinformatics programs (pamaunkey sub-cluster at VIMS)īlasr v 20170925, the Pacific Biosciences long read alignerīowtie v 1.1.2, Ultrafast memory-efficient short read alignerīowtie v 1.2.1, Ultrafast memory-efficient short read alignerīowtie2 v 2.1.0, Ultrafast memory-efficient short read alignerīowtie2 v 2.3.2, Ultrafast memory-efficient short read alignerīowtie2 v 2.3.3.1 Ultrafast memory-efficient short read alignerĬairo v 1.10.2, 2d vector graphics libraryĬharm++ v 6.5.0, parallel object-oriented language based on C++Ĭheetah v 2.4.4, open-source template and code generation toolĬirconspect v 0.2.6, Contig spectrum generatorĬloog-ppl v 0.15.11, Chunky loop generator for Z-polyhedra (with PPL as backend)Ĭmake v. Note: Table can be sorted, click on heading to sort NameĪbinit v 7.10.5, Condensed matter physics softwareĪCML 5.1.0 multi-threaded (AMD Core Math Library)ĪCML 5.1.0 multi-threaded w/64bit integers (AMD Core Math Library)ĪCML 5.1.0 w/64bit integers (AMD Core Math Library)ĪCML 5.3.1 multi-threaded (AMD Core Math Library)ĪCML 5.3.1 multi-threaded w/64bit integers (AMD Core Math Library)ĪCML 5.3.1 w/64bit integers (AMD Core Math Library)ĪCML 6.1.0 multi-threaded (AMD Core Math Library)Īllpaths-lg v 47017, Short read genome assemblerĪllpaths-lg v 52488, Short read genome assemblerĪMD APP SDK v 2.9-1, AMD development SDK (only available on ice nodes)ĪMOS v. Software Table Note: "def" means this is the default version of this compiler on this sub-cluster. Note: Some software packages encompass several categories for the sake of compactness, only the most descriptive category is listed in the table. ![]() Job schedulers and other system resource management and monitoring tools Modeling and simulation packages, including many discipline-specific applications General-purpose utilities and miscellaneous software Geospatial and GIS libraries and programming environments Programming languages, compilers, and code development toolsĭocumentation systems and text processing tools Please see this separate page which discusses the various distributions of Python on the cluster. The following keys identify the various subclusters, compiler suites, and categories that are listed in the table. To facilitate locating the software that you need, the table can be sorted on any column by clicking on the column heading. If you need a package that is not listed here, or would like to have a listed package installed on additional subclusters, please submit a Software Request via the HPC Help Desk or send an email to. Many other standard utilities are included in the RHEL/CentOS operating system distributions with a few exceptions, those are not listed here, nor are application packages which are maintained independently by users or departments. The software matrix below itemizes the various packages which are available on William and Mary's SciClone cluster, organized by subcluster. ![]() Software HPC (SciClone and Chesapeake) Software Last update: May 1st, 2018
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